Emmanouil Maragkakis
Stadtman Principal Investigator & Chief Of Computational Genomics Unit
Baltimore, Maryland, United States
Summary
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Senior🎓
Top SchoolEmmanouil Maragkakis is a Stadtman Principal Investigator and Chief of the Computational Genomics Unit at the NIH with 15 years of experience applying data-driven and systems biology to genomics, RNA biology and aging. Trained across physics, biology and bioinformatics (PhD), he bridges rigorous quantitative modeling and practical bioinformatics to decipher how genome dysregulation drives disease and to uncover precision-medicine strategies. He leads research that integrates machine learning with large-scale genomic and transcriptomic data, moving insights from algorithm to biological interpretation. A polyglot coder comfortable in Perl, Go, R and Python, he combines hands-on tool development with team leadership in a translational research environment. Based in Baltimore, his interdisciplinary background enables novel approaches at the interface of biology and informatics that few computational genomicists pursue.
15 years of coding experience
3 years of employment as a software developer
Doctor of Philosophy (PhD), Bioinformatics, Doctor of Philosophy (PhD), Bioinformatics at The Martin Luther University of Halle-WittenbergPhysics, Physics at National and Kapodistrian University of Athens
Github Skills (57)
bam10
seq10
sequencing10
bioinformatics10
snakemake9
structural-variation9
file-format9
sam9
pairwise9
perl9
struct9
fastq9
argument-parsing9
clip9
throughput9
Programming languages (8)
Github contributions (5)
mnsmar/nvimrc
Dec 2017 - Feb 2023
Contributions:12 pushes, 1 branch in 5 years 3 months
maragkakislab/samutils
Jun 2019 - May 2022
Standalone utility scripts for manipulating SAM files
Contributions:5 reviews, 7 PRs, 7 pushes in 2 years 11 months
samsam-filesutility-scriptsstandalone
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