Erin Pranckeviciene
Senior Researcher And Instructor In Biomedical Informatics
Canada
Summary
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Rockstar🎓
Top SchoolErin Pranckeviciene is a bioinformatician and senior researcher with nine years of focused experience building NGS analysis pipelines, genomic databases, and interoperable health informatics solutions across academic and clinical settings. She combines hands-on Linux sysadmin skills with graduate-level teaching in data mining and health informatics, and has driven projects from fungal Nanopore diagnostic algorithms to methylome data management and hospital-grade WES/WGS pipelines. Erin holds a PhD in Cellular and Molecular Medicine (Bioinformatics) and a graduate certificate in genomic counselling and variant interpretation, blending deep computational expertise with clinical genomics interpretation. Comfortable moving algorithms from research into production, she has a track record of creating annotation platforms and local variant repositories that improve clinical reporting workflows. Notably, she contributed software and workflow integrations for both HPC and Galaxy environments, demonstrating a rare mix of reproducible research practice and operational deployment experience.
9 years of coding experience
16 years of employment as a software developer
Graduate training in Informatics Engineering, Graduate training in Informatics Engineering at Kaunas University of TechnologyGRADUATE CERTIFICATE IN GENOMIC COUNSELLING AND VARIANT INTERPRETATION (GCGCVI) Genome Sciences/Genomics, GRADUATE CERTIFICATE IN GENOMIC COUNSELLING AND VARIANT INTERPRETATION (GCGCVI) Genome Sciences/Genomics at The University of British ColumbiaDoctor of Philosophy (Ph.D.) Cellular and Molecular Medicine Bioinformatics, Doctor of Philosophy (Ph.D.) Cellular and Molecular Medicine Bioinformatics at University of Ottawa
English, Lithuanian, Russian
Github Skills (11)
bioinformatics10
seq10
conda10
package-management10
bioconda10
rna-seq9
genomics8
snakemake7
scalable5
gemini1
database1
Programming languages (2)
Github contributions (5)
erinijapranckeviciene/annotate-with-vcfanno
Jun 2019 - Jan 2025
Contributions:20 pushes, 1 branch in 5 years 7 months
erinijapranckeviciene/dnpatterntools
Aug 2018 - May 2020
Contributions:3 releases, 64 pushes, 3 branches in 1 year 9 months
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