Etienne Camenen
Ingénieur at Inserm
Paris, Ile-de-France
Summary
👤
Senior🎓
Top SchoolEtienne Camenen is a bioinformatics engineer with nine years’ experience integrating multi-omics data for clinical and research projects, currently leading bioinformatics efforts at INSERM on AI-driven stratification of rare autoimmune diseases. He combines deep statistical and computational expertise—from RNA-seq (bulk, single-cell, spatial) and proteomics to HLA prediction and deconvolution—with production-grade software practices (R/Python, Snakemake, Docker, Galaxy). Etienne has a strong track record of making advanced methods accessible to biologists via Shiny and Galaxy interfaces and contributed to the widely used Galaxy tools-iuc ecosystem by developing an R-based multivariate analysis tool. His academic background spans biology, biostatistics and bioinformatics (MSc degrees from Rennes, Toulouse and Nantes), and he regularly supervises and trains junior researchers while presenting at international congresses. Notably, he has improved and packaged integration methods such as RGCCA for CRAN, blending methodological development with practical deployment in multicenter studies.
9 years of coding experience
Master 2 (M2), Bioinformatics, Master 2 (M2), Bioinformatics at Nantes UniversitéMaster 2 (M2), Biostatistics, Master 2 (M2), Biostatistics at Université Paul Sabatier (Toulouse III)Master 2 (M2), Biology, General, Master 2 (M2), Biology, General at Université de Rennes
French, English, Spanish
Github Skills (4)
wrapper10
tooling10
r10
galaxy9
Programming languages (5)
Github contributions (5)
galaxyproject/tools-iuc
Sep 2020 - Jul 2021
Tool Shed repositories maintained by the Intergalactic Utilities Commission
Role in this project:
Back-end Developer
Back-end DeveloperContributions:11 reviews, 24 commits, 1 PR in 10 months
Contributions summary:Etienne primarily contributed to the development of a multi-variate analysis tool within the `galaxyproject/tools-iuc` repository. Their commits focused on adding, formatting, and modifying an R-based launcher script. The user also updated the tool, and the code changes indicate a focus on implementing and refining a specific analysis tool within the broader framework of the Galaxy project. The changes also reflect code style improvements.
intergalacticrepositoriesusegalaxywrapperscommission
ecamenen/MultiOmics4ImmunAID
Jul 2022 - Apr 2024
Contributions:67 pushes, 1 branch in 1 year 9 months
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