Farid Chaabane
Research Associate - Bioinformatician
Pully, Vaud, Switzerland
Summary
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Rockstar🎓
Top SchoolFarid Chaabane is a research associate and bioinformatician with four years of experience building scalable, reproducible NGS pipelines for clinical and diagnostic settings. He has applied his skills at CHUV and Nestlé, evaluating nanopore sequencing for bloodstream infection diagnostics and developing workflows for high-throughput clinical metagenomics. Comfortable moving projects from evaluation to production, he combines hands-on data processing with pipeline engineering and an eye for clinical applicability. Based in Pully, Switzerland, Farid blends academic training from the University of Lausanne with practical hospital-facing experience. Notably, he has experience balancing rapid method validation (e.g., RNA/DNA depletion effects) with robust, repeatable analysis suited to regulated environments.
4 years of coding experience
2 years of employment as a software developer
University of Lausanne, University of Lausanne, University of Lausanne, University of Lausanne at University of Lausanne
French, Arabic, English
Github Skills (26)
package-management10
conda10
forge10
bioinformatics10
bioconda10
bam9
ncbi9
metagenomics9
fasta8
fastq8
conda-forge8
sarif8
snakemake8
simulator7
simulation7
Programming languages (7)
Github contributions (5)
farchaab/bioconda-recipes
Oct 2023 - Sep 2024
Conda recipes for the bioconda channel.
Contributions:52 pushes, 19 branches in 11 months
farchaab/staged-recipes
Oct 2023 - Oct 2023
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Contributions:12 pushes, 1 branch in 13 days
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