Fathi Elloumi
Staff Scientist at National Cancer Institute (NCI)
Bethesda, Maryland, United States
Summary
👤
Senior🎓
Top SchoolFathi Elloumi is a Staff Scientist based in Bethesda with 11 years of focused bioinformatics and software engineering experience, currently applying advanced RNA‑Seq and microarray analysis at the National Cancer Institute. He combines a strong academic foundation (PhD in Computer Science) with industry and government roles spanning bioinformatics pipeline development, algorithm design, and data modeling. Fathi has built production-ready workflows (Snakemake/Python, R) and led technical teams to formalize RNA‑Seq best practices while also teaching and mentoring scientists in analytical methods. His career bridges computational research and applied systems—implementing knowledge‑management platforms, text‑mining tools, and genomic signature discovery—highlighting a rare blend of algorithmic depth and hands-on software delivery. Not obvious from his title, he began as a computer science educator and retains a knack for turning complex biological questions into reproducible, well‑engineered code and analyses.
11 years of coding experience
29 years of employment as a software developer
Master's degree, Advanced Databases and Artificial Intelligence, Master's degree, Advanced Databases and Artificial Intelligence at Faculty of Sciences, Nice, FranceBachelor, Business data processing and Information systems, Bachelor, Business data processing and Information systems at Higher Institute of Management, Tunis, TunisiaPhD, Computer Science, PhD, Computer Science at Faculty of Science, Tunis, Tunisia
English, French, Arabic
Github Skills (35)
shiny10
rstudio10
rna-seq10
r9
r-package9
reactive9
chip-seq9
htmlwidgets9
gene-expression9
bioinformatics9
web-development9
scalable8
d3js7
genomics7
social-network-analysis6
Programming languages (3)
Github contributions (5)
felloumi/Pipeliner
Aug 2016 - Jul 2017
Contributions:57 pushes in 11 months
CBIIT/rcellminerUtilsCDB
Mar 2019 - Oct 2024
Contributions:43 pushes, 1 branch, 3 tags in 5 years 7 months
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