Fatih Karaoglanoglu
Computer Scientist at Simon Fraser University
Canada
Summary
🤩
Rockstar🎓
Top SchoolFatih Karaoglanoglu is a computer scientist with 11 years of experience blending academic research and applied bioinformatics engineering, currently working at Simon Fraser University after a long PhD and research assistantship there. He has designed and implemented computational methods for cfDNA sequencing and integrated bioinformatics pipelines with clinical workflows during a tenure at Imagia Canexia Health, demonstrating skill in translating research prototypes into clinical-grade systems. His background spans high-performance computing research and industry internships, reflecting comfort with both algorithmic work and systems engineering. Trained in computer engineering (Bilkent) and pursuing a PhD in Computing Science, he brings strong computational theory foundations alongside hands-on sequencing-data analytics. Colleagues describe him as someone who navigates between deep research questions and practical pipeline delivery, and he appears to maintain a pragmatic, problem-solving focus even in exploratory projects.
11 years of coding experience
7 years of employment as a software developer
Master of Science - MS, Computer Engineering, Master of Science - MS, Computer Engineering at Bilkent ÜniversitesiDoctor of Philosophy - PhD, Computing Science, Doctor of Philosophy - PhD, Computing Science at Simon Fraser University
Turkish, English
Stackoverflow
31reputation
521reached
0answers
1question
Github Skills (48)
package-management10
conda10
bioinformatics10
snakemake9
bioconda9
sequence8
discovery8
sequence-alignment7
fusion7
workflow-management7
generics6
act6
c-string6
ipython6
python6
Programming languages (7)
Github contributions (5)
vpc-ccg/tksm
Jun 2023 - Jan 2025
Very modular, very cool long-read transcriptomic simulator
Contributions:2 releases, 4 reviews, 8 PRs in 1 year 7 months
vpc-ccg/genion
Mar 2021 - Jun 2022
GENe fusION
Contributions:3 releases, 105 commits, 2 PRs in 1 year 3 months
gene-fusiongenefusion
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