Federico Marini
Head Of The Bioinformatics Group
Mainz, Rhineland-Palatinate, Germany
Summary
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Rockstar🎓
Top SchoolFederico Marini is Head of the Bioinformatics Group at the University Medical Center Mainz with 12 years of experience developing reproducible, interactive omics analysis tools and leading transcriptome and single-cell data projects. Trained as a biomedical engineer and PhD bioinformatician, he bridges statistics, genomics and biology to deliver user-centered visualization, advanced modeling and network-aware functional interpretation—most often implemented in R and Bioconductor. His work on platelet transcriptomes during a Virchow Fellowship exemplifies a niche expertise in immunology and cancer-related omics within collaborative consortia like SFB1292. As joint head of the BIUM(MZ) core facility he pairs technical leadership with hands-on software development and support for biomedical researchers. Outside the lab he balances leadership with a hands-on family life, hinting at a pragmatic, human-centered approach to complex computational problems.
12 years of coding experience
3 years of employment as a software developer
Ph.D. (Dr. rer. physiol.), Bioinformatics, Ph.D. (Dr. rer. physiol.), Bioinformatics at Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI), University Medical Center MainzUniversität Karlsruhe (TH)Master's degree, Biomedical/Medical Engineering, 110/110, Master's degree, Biomedical/Medical Engineering, 110/110 at Politecnico di Milano
Italian, English, German, Spanish
Stackoverflow
1reputation
0reached
0answers
0questions
Github Skills (178)
python10
package-management10
feature-extraction10
shinydashboard10
spatial-transcriptomics10
tidyverse10
transcriptomics10
gene-expression10
bioconductor10
ggplot10
clustering10
deconvolution10
data-exploration10
r10
shiny10
Programming languages (13)
Github contributions (5)
federicomarini/GeneTonic
Jun 2019 - Oct 2022
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
Contributions:1 release, 7 reviews, 1018 commits in 3 years 4 months
bioconductortranscriptomicsrna-seq-analysistranscriptomegui
federicomarini/sessionDiffo
Nov 2019 - May 2020
Compare `sessionInfo`s in a smooth way
Contributions:24 commits, 1 PR, 30 pushes in 5 months
smooth
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