Florianย Mauffrey
Computational Biologist
Nyon, Vaud, Switzerland
Summary
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Top SchoolFlorian Mauffrey is a computational biologist with eight years of experience translating high-throughput sequencing data into actionable insights across clinical, environmental, and epidemiological contexts. He has led pathogen genomics and surveillance projects at major Swiss hospitals, developed R Shiny tools for outbreak tracking, and built robust pipelines for WGS serotyping, transcriptomics, proteomics and ChIP-seq analyses. His work spans eDNA biodiversity assessments in deep-sea and offshore environments to hospital outbreak investigations of MRSA, Klebsiella and Pseudomonas, showing a rare blend of environmental and clinical genomics. Based in Nyon, Switzerland, he combines hands-on bioinformatics development with project leadership and a track record of publications that inform infection control and vaccine-impact studies. An often-overlooked strength is his practical experience deploying third-generation sequencing (Nanopore) in field and clinical workflows, enabling rapid, real-world genomics applications.
8 years of coding experience
Masterโs Degree, Environmental sciences and engineering, Graduated with honors, Masterโs Degree, Environmental sciences and engineering, Graduated with honors at Universitรฉ de StrasbourgDoctor of Philosophy (Ph.D.), Biology, Doctor of Philosophy (Ph.D.), Biology at Institut national de la recherche scientifique
French, English, German
Github Skills (23)
sequence6
biodiversity6
java6
nmf6
bioinformatics5
graph5
classification5
taxonomy5
visualization5
biology5
opengl4
interactive4
kraken4
ati4
genomes2
Programming languages (4)
Github contributions (5)
fmauffrey/NanoPlasm
Jun 2023 - Nov 2024
Contributions:1 release, 3 PRs, 29 pushes in 1 year 5 months
fmauffrey/StableDiffusion-UI-for-AMD-with-DirectML
Nov 2022 - Dec 2022
Contributions:25 commits, 17 pushes, 4 comments in 1 month
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