Frederic Lemoine
Senior Bioinformatics Scientist
Paris, Ile-de-France
Summary
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SeniorFrederic Lemoine is a Senior Bioinformatics Scientist based in Paris with over a decade of experience developing methods to integrate, manage and analyze genomic big data. At Institut Pasteur he designs scalable analysis pipelines and data-management practices, while as Chief Data Officer for Datacovid he led end-to-end survey data governance, quality control and publication for a high-impact public project. His background spans academia and industry—from a PhD and postdoc to bioinformatics project management at GenoSplice—giving him a strong blend of research rigor and production-level delivery. He also contributes to bioinformatics packaging and reproducibility in the bioconda ecosystem, focusing on automation and robust build processes for Go-based tools. Known for turning complex genomic requirements into practical, well-documented workflows, he pairs deep domain knowledge with a pragmatic engineering mindset.
10 years of coding experience
6 years of employment as a software developer
Github Skills (11)
bioinformatics10
automation10
conda10
automations10
build-system10
go10
bash10
package-management10
testing7
docker4
dockers4
Programming languages (11)
Github contributions (5)
bioconda/bioconda-recipes
May 2018 - Sep 2022
Conda recipes for the bioconda channel.
Role in this project:
Automation Engineer / Build & Release Engineer
Automation Engineer / Build & Release EngineerContributions:10 commits, 12 PRs, 16 comments in 4 years 4 months
Contributions summary:Frederic primarily contributes to the automation and build processes within the bioconda-recipes repository. Their work focuses on updating and correcting the build scripts (`build.sh`) for various bioinformatics tools, specifically `goalign` and `gotree`. They incorporate Go-specific build steps, manage dependencies, and implement testing procedures within the build process. The commits indicate a focus on ensuring the successful packaging and deployment of these tools within the bioconda environment.
recipescondabiocondabioinformaticspackage-management
fredericlemoine/rna-pipeline
Apr 2016 - Aug 2019
Contributions:34 commits, 15 pushes in 3 years 4 months
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