Gabriele Girelli
Sr. Computational Biologist
Stockholm, Sweden
Summary
👤
Senior🎓
Top SchoolGabriele Girelli is a senior computational biologist based in Stockholm with 11 years of experience applying bioinformatics, spatial transcriptomics, and bioimaging to unravel gene regulation in 3D nuclear architecture. He played a hands-on role at 10x Genomics in bringing Xenium and its cell segmentation and protein kits to market, and now advances large-scale biological discovery at Cubase Bio. Trained with a PhD in Bioinformatics from Karolinska and a strong experimental background from Trento, he bridges wet-lab intuition and production-grade computational pipelines. Colleagues describe him as both a technically decisive developer and a creative problem-solver who translates microscopy and sequencing data into reproducible insights. Notably, his career blends product delivery in industry with fundamental research on how nuclear structure shapes expression, reflecting a rare mix of scale-aware engineering and deep domain expertise.
11 years of coding experience
Doctor of Philosophy - PhD, Bioinformatics, Passed, Doctor of Philosophy - PhD, Bioinformatics, Passed at Karolinska InstituteMaster's degree, Cellular and Molecular Biotechnologies, 105/110, Master's degree, Cellular and Molecular Biotechnologies, 105/110 at Università degli Studi di Trento
Italian, English, svedese
Github Skills (159)
probe10
image-processing10
forge10
microscopy10
radial10
fastq-files10
sodium10
nis10
biomart10
computer-vision10
r-package10
curve10
trim10
image10
duplex10
Programming languages (11)
Github contributions (5)
ggirelli/SpectraScope
May 2019 - Jun 2019
Interactive interface to visualize spectra and filter sets for any microscope. Easily customizable.
Contributions:4 releases, 77 commits, 2 PRs in 1 month
pythonmicroscopevisualizeinteractive-interfacecustomizable
ggirelli/ood-fish
Mar 2017 - Apr 2019
Contributions:60 commits, 24 pushes, 1 branch in 2 years 1 month
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