Gibraan Rahman
Bioinformatics Software Engineer II
San Diego, California, United States
Summary
👤
Senior🎓
Top SchoolGibraan Rahman is a Bioinformatics Software Engineer II with a PhD in Bioinformatics and nine years of experience building reproducible, production-ready tools for genomics and high-dimensional NGS analysis. At Chan Zuckerberg Biohub Network he combines strong software engineering practices (Git, CI/CD, Docker/Singularity) with expertise in Python and R to deliver pipelines and analytics used by cross-functional research teams. He also brings systems-level performance and safety skills from Rust and Go work, and uses Nextflow/Snakemake to make bioinformatics workflows portable and composable across HPC and cloud environments. Comfortable on *nix systems and fluent in SQL, he bridges statistical rigor (Bayesian methods) and pragmatic engineering to accelerate translational research. A NeoVim aficionado and active open-source maintainer, he favors clean, reproducible tooling that scales from notebooks to clusters.
9 years of coding experience
2 years of employment as a software developer
University of California, San DiegoBachelor's Degree, Biomedical Engineering, Bachelor's Degree, Biomedical Engineering at The University of Texas at Austin
English
Github Skills (111)
projection10
snakemake10
python10
topological-data-analysis10
regression10
microbiome10
gtk10
computational-biology10
approximation10
biplot10
qt10
dimensionality-reduction10
ncbi10
sampling10
atlassian10
Programming languages (8)
Github contributions (5)
gibsramen/qupid
Jan 2022 - Sep 2022
Case-control matching for microbiome data
Contributions:2 releases, 4 reviews, 155 commits in 7 months
case-controlpythonmatchingbioinformaticsmicrobiome-data
biocore/BIRDMAn
Nov 2020 - Jul 2022
Bayesian Inferential Regression for Differential Microbiome Analysis
Contributions:6 releases, 7 reviews, 267 commits in 1 year 8 months
regressionpythonmicrobiome-analysisbayesian-inferencestan
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