Gregory Schwartz
Assistant Professor at University Health Network
Old Toronto, Ontario, Canada
Summary
👤
Senior🎓
Top SchoolGregory Schwartz is an Assistant Professor and computational biologist with 12 years of experience developing algorithms to dissect cellular heterogeneity and integrate multi-omic data. He created production-quality tools such as TooManyCells for hierarchical spectral clustering and novel visualizations, inteGREAT for cross-modal biomarker discovery, and HeatITup for annotating internal tandem duplications, work begun during a postdoc at the University of Pennsylvania and continued at the University of Toronto and University Health Network. His research blends rigorous mathematical measures of hierarchy and diversity with practical software engineering, making reproducible, open-source implementations available on GitHub. Based in Toronto, he applies single-cell analysis to reveal disease mechanisms and has a track record of translating methodological innovation into tools used for pan-cancer and immune-repertoire studies.
12 years of coding experience
Doctor of Philosophy - PhD, Doctor of Philosophy - PhD at Drexel UniversityBachelor of Arts (B.A.), Bachelor of Arts (B.A.) at Franklin & Marshall College
English
Github Skills (200)
vim10
gene-expression10
dimensionality-reduction10
api10
switcher10
visualization10
seq10
haskell10
melpa10
emacs-lsp10
single-cell-analysis10
rna-seq10
visual-analytics10
clustering10
union10
Programming languages (15)
Github contributions (5)
GregorySchwartz/birch-beer
Mar 2018 - Oct 2022
Generate a tree for displaying a hierarchy of groups with colors, scaling, and more.
Contributions:104 commits, 52 pushes, 2 branches in 4 years 7 months
groupsscalinghierarchy
GregorySchwartz/find-clumpiness
Dec 2015 - Jan 2019
Contributions:18 commits, 23 pushes, 1 branch in 3 years 1 month
haskelljsonformatted
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