Guillaume Gautreau
Chargé De Recherche at INRAE
Greater Paris Metropolitan Region France
Summary
👤
Senior🎓
Top SchoolGuillaume Gautreau is a research scientist in microbial comparative genomics and bioinformatics with 10 years of experience building graph-based pangenome methods for metagenomics and microbial community analysis. Now a titulaire Chargé de Recherche at INRAE’s MaIAGE unit, he leads and coordinates projects that bridge method development (MIGGS, PanGAIMiX) and applied pilots like digital twins for fermentation. Trained both as an engineer in software (DUT informatique) and as a biologist (Master in bioinformatics/biostatistics and a PhD), he combines strong computational skills (R, Perl, Bash, containerization, HPC) with deep domain expertise in sequencing technologies and genome assembly. Beyond algorithms, he actively navigates ethical and legal aspects of health and microbiome data, holding postgraduate law studies and having published on health law and data regulation. Known for turning complex sequencing data into compact graph representations, he also contributes to interdisciplinary coordination across ANR and foundation-funded consortia. Based in Greater Paris, he keeps an uncommon dual focus on cutting-edge computational genomics and the regulatory frameworks that make data-driven science sustainable.
10 years of coding experience
Capacité en droit filière administration avec l'Institut d'Etude à Distance Paris 1, Law, 16.42/20 permettant le bénéfice de l'art. 6 al. 3 de l'arrêté du 25/09/21, Capacité en droit filière administration avec l'Institut d'Etude à Distance Paris 1, Law, 16.42/20 permettant le bénéfice de l'art. 6 al. 3 de l'arrêté du 25/09/21 at Université Paris 1 Panthéon-SorbonneDoctorat, Sciences de la vie et de Santé, Doctorat, Sciences de la vie et de Santé at Université Paris-SaclayMaster 2 de Biologie-Santé, Bioinformatique - Biostatistiques, Mention TRÈS BIEN, Master 2 de Biologie-Santé, Bioinformatique - Biostatistiques, Mention TRÈS BIEN at Université de NantesMaîtrise (Master 1), Droit de la santé, 14,24/20, Maîtrise (Master 1), Droit de la santé, 14,24/20 at Université Paris 8Diplôme Universitaire Technologique, Informatique, Diplôme Universitaire Technologique, Informatique at IUT de Vannes
English
Github Skills (90)
blast10
taxonomy10
genomes10
microbial-genomics10
genomics10
bacteria10
par10
rna-seq10
graph-drawing10
edges10
microbiology10
graph10
nodes10
metagenomics10
bioinformatics10
Programming languages (9)
Github contributions (5)
labgem/PPanGGOLiN
Oct 2017 - Oct 2021
Build a partitioned pangenome graph from microbial genomes
Contributions:6 releases, 2 reviews, 116 commits in 4 years
genomesbacteriagenomicsmicrobialcomparative-genomics
ggautreau/PPanGGOLiN
Jan 2023 - Jan 2025
Build a partitioned pangenome graph from microbial genomes
Contributions:8 PRs, 16 pushes, 3 branches in 2 years
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