Hans Vasquez-gross
Bioinformatic Scientist In The Bioinformatics Core
Reno, Nevada, United States
Summary
👤
Senior🎓
Top SchoolHans Vasquez-gross is a Bioinformatic Scientist with 12 years of experience building reproducible NGS pipelines and deploying scalable analyses on HPC and cloud platforms at research universities. He combines deep wet-lab genomics knowledge (genome and transcriptome assembly, variant discovery, ATAC/ChIP, microbiome, scRNA‑seq) with strong software engineering skills in Python, Bash, R and cluster/cloud orchestration. Comfortable across sequencing technologies from Illumina to PacBio HiFi and Oxford Nanopore, he routinely turns large datasets into productionized pipelines and teaches those workflows to diverse audiences. His background in integrative genetics and genomics (MS/PhD work at UC Davis) underpins a rigorous approach to statistical modeling, phylogenetics and machine learning for predictive analytics. Beyond coding and analysis, he has a history of building web tools, relational databases and infrastructure to reduce long‑term costs and improve lab throughput. Colleagues rely on him for bridging computational best practices with practical, reproducible genomics solutions.
12 years of coding experience
9 years of employment as a software developer
Doctor of Philosophy - PhD, Integrative Genetics and Genomics, Doctor of Philosophy - PhD, Integrative Genetics and Genomics at University of California, Davis
Github Skills (48)
genomics8
jbrowse8
bioinformatics8
snakemake8
nmf7
weighted7
structural-variation7
biodiversity7
sequence7
mixing7
gff6
depth6
bioconda6
configurations6
linux6
Programming languages (8)
Github contributions (5)
hans-vg/jbplugin-varianteffect
Mar 2018 - Oct 2019
A JBrowse plugin to display the Variant Effect information in the "ANN" field of a VCF file
Contributions:1 release, 20 commits, 3 PRs in 1 year 7 months
annjbrowsefieldvcfjbrowse-plugin
Nevada-Bioinformatics-Center/unix_configurations
Mar 2022 - Oct 2024
Contributions:3 pushes, 1 branch in 2 years 7 months
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