Hermes Paraqindes
Bioinformatics Scientist
Greater Lyon Area France
Summary
👤
Senior🎓
Top SchoolHermes Paraqindes is a bioinformatics scientist based in the Greater Lyon area with eight years of experience bridging computational analysis and cancer research. He holds a PhD and a Master's in bioinformatics and has progressed from RNA-seq analyst roles to postdoctoral research and industry work at ADLIN Science. His expertise spans pipeline development, transcriptomic and splicing analyses (including U12 gene investigations on GTEx), and automation of reproducible workflows for large-scale RNA-seq projects. Comfortable in both academic and applied settings, he has delivered insights on gene expression heterogeneity across tissues and translated research methods into production-ready analyses. Known for combining rigorous molecular biology grounding with practical software-driven solutions, he often surfaces subtle patterns in splicing and intron retention that others miss. Fluent in French research environments, he brings a pragmatic, data-first approach to bioinformatics challenges.
8 years of coding experience
Master, Bio-Informatique Moléculaire: Méthodes & Analyses, Master, Bio-Informatique Moléculaire: Méthodes & Analyses at Université Claude Bernard Lyon 1
English, French, albanais, Italian
Stackoverflow
23reputation
2kreached
2answers
1question
Github Skills (22)
rna-seq10
seurat9
shiny-apps8
single-cell-genomics7
bioinformatics7
nextflow7
single-cell-analysis7
pipeline7
cran7
genomics7
legend6
ggplot6
stroke6
dt6
shiny6
Programming languages (3)
Github contributions (5)
hermespara/rRMSAnalyzer
May 2023 - Feb 2025
A set of easy-to-use functions to analyze end read count data of RiboMethSeq (RNA 2'Ome)
Contributions:2 PRs, 6 pushes, 1 branch in 1 year 9 months
hermespara/Projects
Sep 2018 - Mar 2020
Contributions:1 push, 1 branch in 1 year 6 months
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