Hilmar Lapp

Durham, North Carolina, United States

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Summary

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Rockstar

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Top School

Hilmar Lapp is a research fellow and informatics leader with 26 years of cross-disciplinary experience at the nexus of biology, data science, and software engineering, focused on FAIR and reproducible data, code, and ML models. He directs data and informatics infrastructure for large-scale initiatives such as the HDR Imageomics Institute and co-led foundational projects like Phenoscape and Phyloreferencing that pioneered machine reasoning and standardised clade definitions. A long-time open-source contributor and BioPerl core developer, he has hands-on backend and API experience (notably fixing and extending Bio::Species) as well as front-end work on community tools, reflecting a full-stack pragmatism rarely found in senior researchers. Hilmar helped found community data efforts including Data Carpentry and Dryad, and brings rare institutional and nonprofit governance experience from roles on multiple boards. Based in Durham, NC, he combines deep domain expertise in organismal trait extraction from unstructured text and images with a track record of building interoperable infrastructure that scales across research communities.

26 years of coding experience

19 years of employment as a software developer

Dipl. Biol. (M.Sc.), Plant Physiology, Cell Biology, Biochemistry, Computer Science, Dipl. Biol. (M.Sc.), Plant Physiology, Cell Biology, Biochemistry, Computer Science at The University of Freiburg

Undergraduate (Pre-Diploma), Biology, Undergraduate (Pre-Diploma), Biology at Ludwig-Maximilians-Universität München

German, English

Github Skills (13)

css10

bioinformatics10

bioperl10

bootstra10

html-template10

bootstrap10

perl10

jinja210

api-design10

data-parsing9

object-oriented-programming9

font-awesome9

pelican8

Programming languages (26)

MakefileGoCommon LispHTMLJupyter NotebookTypeScriptShellR

Github contributions (5)

bioperl/bioperl-live

May 2000 - Aug 2017

Core BioPerl 1.x code

Role in this project:

Back-end Developer & API Developer

Contributions:3 releases, 2 reviews, 616 commits in 17 years 6 months

Contributions summary:Hilmar primarily focused on modifying the Bio::Species class in the BioPerl core to correct a bug in the classification array and related functions. The user further improved the code by refactoring it for better maintenance and introduced and modified methods. They also added the capability to deal with multiple species, and improved parsing for GenBank and EMBL formats. The changes indicate a strong focus on the back-end aspects and API design of the project.

bioperlpdb-filesbiologytoolkitbioinformatics

DonDebonair/pelican-bootstrap3

Jan 2014 - Jun 2014

Bootstrap 3 theme for Pelican

Role in this project:

Full-stack Developer

Contributions:32 commits in 5 months

Contributions summary:Hilmar primarily contributed to the front-end aspects of the Pelican Bootstrap3 theme. They fixed navigation bar issues, corrected hardcoded paths in the sidebar, and upgraded the Font Awesome library. The user also implemented features related to Disqus comments, including unique identifiers, configurable prefixes, and comment count display. Furthermore, the user made various cosmetic improvements and refactored code for better readability.

bootstrap4bootstrap5bootstrap-3csspelican

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