Ioannis Moustakas
Bioinformatics Analyst
Leiden, South Holland, Netherlands
Summary
👤
Senior🎓
Top SchoolIoannis Moustakas is a bioinformatics analyst and data scientist with a decade of hands-on experience analyzing Next-Generation Sequencing datasets, with the past four years focused on single-cell RNA-seq projects that have contributed to scientific publications. He blends strong programming skills in R and Python (Seurat, DESeq2, NumPy, pandas, scikit-learn) with reproducible pipeline engineering using Snakemake and WDL, Linux command-line fluency, Git-based workflows, and CI/testing practices. Comfortable translating biological questions into rigorous analyses, he routinely consults with wet-lab teams, teaches colleagues, and presents results to diverse audiences. Curious about productionizing ML, he is proactively exploring cloud, MLOps and LLM applications to bridge cutting-edge methods with practical bioinformatics problems.
10 years of coding experience
2 years of employment as a software developer
Master of Science (MS), Plant Pathology/Phytopathology, 8,8, Master of Science (MS), Plant Pathology/Phytopathology, 8,8 at Agricultural University of AthensMaster of Science (MSc), Bioinformatics, Master of Science (MSc), Bioinformatics at Wageningen University
English, Greek, Dutch
Github Skills (50)
single-cell-genomics10
tasks10
bioinformatics10
genomics10
wdl10
cran10
fastq-files9
seq9
rna-seq9
motif8
multimodal-deep-learning8
chip-seq7
structural-variation7
fastq7
pipeline7
Programming languages (10)
Github contributions (5)
johnmous/singleCell
May 2018 - Mar 2019
Contributions:18 commits, 18 pushes, 1 branch in 10 months
chuvalab/dashboard
Jan 2024 - Oct 2024
A dashboard that facilitates the exploration of high trhoughput microscope datasets
Contributions:11 PRs, 42 pushes, 11 branches in 9 months
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