Isak Sylvin
System Engineer at University of Gothenburg
Gothenburg, Sweden
Summary
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Top SchoolIsak Sylvin is a systems engineer and bioinformatician with 10 years of experience building and maintaining national genomic platforms, production bioinformatics pipelines and HPC deployment for clinical and research settings. Based in Gothenburg, he has led microbial and COVID sequencing projects at the University of Gothenburg and Karolinska University Hospital, authored open-source tooling (including gms-artic and microSALT), and coordinated genomic medicine efforts across Sweden. His background blends engineering-level software development, database and build engineering with hands-on project leadership and teaching, from university courses to pro bono community training. Colleagues value him for turning complex sequencing workflows into reliable, auditable systems and for an ability to straddle research, clinical operations and open-source collaboration. Unobvious detail: he has also applied his data skills to video game startups and pharmaceutical sales tooling, reflecting a pragmatic versatility across industries.
10 years of coding experience
9 years of employment as a software developer
Engineerâs Degree, Biomathematics, Bioinformatics, and Computational Biology, Engineerâs Degree, Biomathematics, Bioinformatics, and Computational Biology at Uppsala universitet / Uppsala University
Swedish, English, Spanish
Github Skills (70)
genomics10
provisioning10
pipeline10
sequence-analysis10
bioinformatics10
nextflow9
tornado9
clarity9
in-place9
ansible-galaxy9
sequence9
python-interface9
ansible8
singularity8
reproducible-science8
Programming languages (12)
Github contributions (5)
NationalGenomicsInfrastructure/internal-provisioning
Jul 2016 - Sep 2017
Ansible repository for deployment stuff
Contributions:53 commits, 1 PR, 1 comment in 1 year 2 months
vagrantdeploymentansibleinfrastructure-managementansible-galaxy
genomic-medicine-sweden/NGPinterface
Sep 2021 - Dec 2022
Simple interface for interacting with the NGP cloud
Contributions:199 commits, 1 branch in 1 year 3 months
nginxurlshortener
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