Jacek Marzec

Lisbon, Portugal

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Summary

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Senior

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Top School

Jacek Marzec is a computational biologist with nine years’ experience building reproducible bioinformatics pipelines that integrate and visualize heterogeneous cancer patient datasets, from WGS/WTS and scRNA-seq to DNA methylation and GWAS. Currently at CoLAB AccelBio in Lisbon, he focuses on multi-omics analyses to discover biomarkers and therapeutic targets for drug discovery, drawing on prior precision oncology work at the University of Melbourne and Barts Cancer Institute. He combines hands-on pipeline development, machine learning, and automated workflow design to deliver actionable patient reports and single-cell atlases. Trained to PhD level in bioinformatics, Jacek is especially adept at mining public cohorts (TCGA/ICGC) to enrich project data—a skill that helps translate large-scale sequencing data into practical insights for translational research.

9 years of coding experience

8 years of employment as a software developer

Master of Science (MS), Applied Bioinformatics, Master of Science (MS), Applied Bioinformatics at Cranfield University

Bachelor of Science (BS), Molecular and Cellular Biology, Bachelor of Science (BS), Molecular and Cellular Biology at The University of Huddersfield

Bachelor of Science (BS), Biotechnology, Bachelor of Science (BS), Biotechnology at Uniwersytet Śląski w Katowicach

Doctor of Philosophy (PhD), Bioinformatics, Doctor of Philosophy (PhD), Bioinformatics at Queen Mary, U. of London

English, Polish

Github Skills (15)

rna-seq10

driver9

transcriptomics6

genomics6

statistics5

python3

r-package3

data-science2

evolution2

bioinformatics2

machine-learning2

visualization2

javascript1

variants1

Programming languages (2)

RHTML

Github contributions (5)

umccr/driver-analysis

May 2019 - Feb 2021

Workflow for driver events identification across cohorts of tumours

Contributions:113 commits, 75 pushes, 1 branch in 1 year 9 months

driver

JMarzec/PIXdb

Feb 2018 - Feb 2022

Contributions:43 pushes, 1 branch in 4 years 1 month

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