Jaime Castro-mondragon
Bioinformatician
Oslo, Norway
Summary
👤
Senior🎓
Top SchoolJaime Castro-mondragon is a bioinformatician with 12 years of experience building algorithms and reproducible workflows to analyze sequence and multi-omics data across academia and industry. He has led motif database curation and pipeline development for the JASPAR team, co-authored 20+ peer-reviewed papers, and has a strong track record mentoring students and reviewing for top journals. At Nykode Therapeutics he translated sequence features into ML models to explain experimental outcomes and designed RNA‑seq analyses for vaccine-relevant projects, and he now applies that expertise at Akershus universitetssykehus. Trained with a PhD in Bioinformatics and a Master in Systems Biology, he blends deep methodological development with practical pipeline automation and data visualization. Jaime is a fan of reproducible research and automation—his public website and tools reflect a preference for craft both on and off the computer. Based in Oslo, he brings a rare mix of database-scale curation experience and hands-on machine learning applied to protein and regulatory sequence analysis.
12 years of coding experience
8 years of employment as a software developer
Master in Systems Biology, Bioinformatics, Master in Systems Biology, Bioinformatics at Ecole normale supérieureUniversidad Nacional Autónoma de México (UNAM)Doctor of Philosophy - PhD, Bioinformatics, Doctor of Philosophy - PhD, Bioinformatics at Aix-Marseille University
Spanish, English, French, Norwegian
Github Skills (11)
seq8
infer8
gene-expression8
r-package7
scenic7
rna-seq7
transcriptomics6
bioinformatics5
software-quality2
genomics1
genome1
Programming languages (4)
Github contributions (5)
jaimicore/JCastro_CV
Sep 2020 - Mar 2025
Contributions:54 pushes, 1 branch in 4 years 6 months
jaimicore/matrix_clustering
Jun 2016 - Nov 2022
Contributions:12 pushes, 1 branch, 6 comments in 6 years 6 months
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