Jake Vancampen
Software Engineer at Providence Health Plan
Portland, Oregon, United States
Summary
🤩
Rockstar🎓
Top SchoolJake Vancampen is a software engineer in Portland, Oregon with nine years of experience focused on genomic data analysis, distributed computing, and open source tooling. With an MS in Bioinformatics and a BS in Biochemistry, he blends domain knowledge of genomics with practical engineering to improve research computing and reproducibility. Jake has contributed backend work to the widely used Snakemake wrappers repository—enhancing GATK tool integrations and adding flexible java_opts support to make pipelines more configurable and testable. He prioritizes good data management and clear methods communication, translating complex bioinformatics workflows into maintainable, production-ready code. Colleagues rely on him for bridging research requirements and scalable pipeline implementations that support robust scientific results.
9 years of coding experience
Master of Science - MS, Bioinformatics, Master of Science - MS, Bioinformatics at University of OregonBachelor of Science - BS, Biochemistry, Bachelor of Science - BS, Biochemistry at University of Portland
French
Stackoverflow
1reputation
0reached
2answers
0questions
Github Skills (15)
bioinformatics10
gatk10
snakemake10
python10
testing9
java7
javas7
go6
nginx6
frequency6
amazon-web-services6
dataframe6
r6
genomicranges6
devops4
Programming languages (16)
Github contributions (5)
snakemake/snakemake-wrappers
Oct 2018 - Oct 2018
This is the development home of the Snakemake wrapper repository, see
Role in this project:
Back-end Developer
Back-end DeveloperContributions:9 commits in 13 days
Contributions summary:Jake primarily contributed to the development of Snakemake wrappers for various GATK tools, including BaseRecalibrator, VariantRecalibrator, and others. Their work involved modifying wrapper scripts to incorporate the `java_opts` parameter, enabling users to pass additional arguments to the Java compiler. This modification indicates a focus on improving the flexibility and usability of the Snakemake pipelines for bioinformatics tasks, with attention to test suite and code style practices. They also addressed issues related to testing and project configuration.
snakemake
snakemake/snakemake-storage-plugin-azure
Nov 2023 - Mar 2025
Snakemake storage plugin for Azure Blob Storage
Contributions:1 release, 1 review, 34 PRs in 1 year 4 months
Find and Hire Top DevelopersWe’ve analyzed the programming source code of over 60 million software developers on GitHub and scored them by 50,000 skills. Sign-up on Prog,AI to search for software developers.