James Abbott
Software Engineer at Eckoh
St Albans, England, United Kingdom
Summary
🤩
Rockstar🎓
Top SchoolJames Abbott is a Junior Software Developer based in St Albans with 12 years of professional experience and a background that bridges graphic design and full‑stack web development. At Eckoh he applies pragmatic coding practices to deliver maintainable software, and he has reinforced his security awareness through open-source contributions to conda-build that fixed path traversal vulnerabilities. He has hands‑on bioinformatics packaging experience in the bioconda ecosystem, creating reproducible conda recipes for tools like Mauve and various Perl modules. A former assistant warehouse manager and coding bootcamp teaching assistant, James combines operational discipline and clear communication with a fast-learning appetite for new platforms. He thrives on practical problem solving and shipping secure, well-documented solutions that scale beyond prototypes.
13 years of coding experience
9 years of employment as a software developer
Fullstack Web Develpment, Computer Programming, Fullstack Web Develpment, Computer Programming at Le WagonBA (Hons) Degree in Graphic Design, Graphic Design, BA (Hons) Degree in Graphic Design, Graphic Design at Sheffield Hallam University
Stackoverflow
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Github Skills (19)
conda-build10
python10
package-management10
tarfile10
bash10
conda10
security10
bioinformatics10
file-manipulation9
filesystem9
perl9
build-automation9
fileio9
operating-system8
sys8
Programming languages (10)
Github contributions (5)
bioconda/bioconda-recipes
Aug 2017 - May 2022
Conda recipes for the bioconda channel.
Role in this project:
Backend Developer
Backend DeveloperContributions:1 review, 31 commits, 46 PRs in 4 years 10 months
Contributions summary:James primarily contributed to the development of recipes for the bioconda channel, focusing on packaging bioinformatics tools using Conda. The contributions involved creating build scripts for various Perl modules, including those related to file handling, OS type detection, and more. Furthermore, the user implemented recipes for tools like libGenome, libMems, and Mauve, demonstrating expertise in the build and packaging of bioinformatics software within the conda ecosystem.
biocondacondabioinformaticspackage-management
conda/conda-build
Apr 2018 - Apr 2018
Commands and tools for building conda packages
Role in this project:Backend Engineer
Backend EngineerContributions:7 commits, 1 comment in 1 day
Contributions summary:James focused on enhancing the security of the `conda-build` package by addressing potential path traversal vulnerabilities during the extraction of tarball archives. Their contributions primarily involved modifying the `conda_build/utils.py` file to incorporate checks for absolute paths and ".." sequences, ensuring files are extracted within the intended directory. The user also addressed coding standards and whitespace issues within the modified code, improving code quality and maintainability. This work helps ensure the package management system functions securely.
condaconda-buildpackage-management
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