Jamie Shallcross
Bioinformatics Specialist
Philadelphia, Pennsylvania, United States
Summary
👤
Senior🎓
Top SchoolJamie Shallcross is a Bioinformatics Specialist with 12 years of experience managing and analyzing large-scale high-throughput sequencing data, currently supporting single-cell RNA-seq projects at the University of Pennsylvania. They design, optimize, and parallelize pipelines with Python, R, and Bash to accelerate analyses and maintain a mixed PHP/MySQL and JavaScript metadata tracking system for complex datasets. Comfortable across Linux, macOS, and Windows, Jamie also provides first-tier support and acts as a primary collaborator liaison for external groups. Past research includes developing bioinformatic workflows and validating DNA aptamer biomarkers, combining computational and wet-lab skills. Known for automating tedious processes, Jamie brings a pragmatic engineering mindset to make biological data more accessible and reproducible.
11 years of coding experience
2 years of employment as a software developer
Bachelor’s Degree, Biochemistry, Bachelor’s Degree, Biochemistry at Oberlin College
English
Github Skills (4)
happy5
webapp4
pipeline4
javascript3
Programming languages (1)
Github contributions (5)
jshallcr/light-pollution
May 2017 - May 2017
Contributions:1 push, 1 branch in 1 day
light-pollutiondatasetlightpollution
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