Jamshed Khan
Distinguished Research Fellow at Northeastern University
Boston, Massachusetts, United States
Summary
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Rockstar🎓
Top SchoolJamshed Khan is a Distinguished Research Fellow based in Boston with a PhD in Computer Science from the University of Maryland and seven years of experience designing high-performance algorithms and data structures for large-scale systems. His work specializes in parallel and memory-hierarchy aware algorithms, with applications spanning algorithm engineering and computational genomics to deliver resource-efficient, scalable solutions. At Northeastern University he focuses on marrying theoretical rigor with practical system-level optimizations to tackle real-world data challenges. Known for approaching problems through a mix of parallel paradigms and cache-aware techniques, he brings both deep academic training and hands-on system design to large-data algorithmics.
7 years of coding experience
Doctor of Philosophy - PhD, Doctor of Philosophy - PhD at University of MarylandBachelor of Science - BS, Bachelor of Science - BS at Bangladesh University of Engineering and TechnologyStony Brook University
English, Bengali
Github Skills (49)
package-management10
nearest-neighbors10
graph10
conda10
mantis10
bioinformatics10
sequence10
suffix-array9
large-scale9
bioconda9
genome8
data-structures8
scale8
disk-based8
genomes8
Programming languages (6)
Github contributions (5)
jamshed/CaPS-SA
May 2023 - Jun 2025
Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays
Contributions:1 release, 44 pushes, 7 branches in 2 years 1 month
suffix-arraydata-structureslcp-arrayparallel-algorithmstext-indexing
COMBINE-lab/cuttlefish
May 2020 - Dec 2022
Building the compacted de Bruijn graph efficiently from references or reads.
Contributions:6 releases, 677 commits, 7 PRs in 2 years 7 months
graph
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