Jan Oppelt
Bioinformatics Core Unit Team Leader
Vienna, Austria
Summary
👤
Senior🎓
Top SchoolJan Oppelt is a bioinformatics leader with a decade of experience designing and running analyses for high-throughput sequencing, specializing in RNA-Seq, smallRNA-Seq, variant calling and genome/transcriptome assembly. Based in Vienna, he currently leads the Bioinformatics Core Unit at St. Anna CCRI, where he combines hands-on pipeline development with experimental design guidance, teaching, and team management. His background spans academic and industry research—from a PhD in Biomolecular Chemistry and postdoctoral method development at UPenn (including a novel direct RNA sequencing method) to product-focused bioinformatics for CNV and structural variant detection that outperformed commercial pipelines. Jan routinely bridges wet-lab and computational teams, translating biological questions into robust, IVDR-aware workflows and reproducible software. He brings both people-management experience from leading multi-member teams and deep technical craftsmanship in workflow prototyping and validation. An uncommon strength is his track record of pairing novel RNA-method development with practical diagnostic pipeline delivery.
10 years of coding experience
10 years of employment as a software developer
Doctor of Philosophy (PhD), Biomolecular Chemistry, Doctor of Philosophy (PhD), Biomolecular Chemistry at Masaryk University BrnoBiochemistry, Biophysics and Molecular Biology, Biochemistry, Biophysics and Molecular Biology at Stockholm University
English, Czech, Slovak
Github Skills (52)
rna-seq10
pathogen10
bam9
next-generation-sequencing9
sequencing9
bioinformatics9
genomics9
libtorch8
genome-assembly8
chip-seq8
vcf-files7
decay7
pipeline7
python7
science6
Programming languages (7)
Github contributions (5)
opplatek/utils
Sep 2019 - Dec 2023
Contributions:78 pushes, 1 branch in 4 years 3 months
opplatek/amazon-s3-backup
Apr 2020 - Feb 2023
Contributions:42 pushes, 1 branch in 2 years 10 months
Find and Hire Top DevelopersWe’ve analyzed the programming source code of over 60 million software developers on GitHub and scored them by 50,000 skills. Sign-up on Prog,AI to search for software developers.