Jean-francois Pombert
Spécialiste Clinique En Biologie Médicale at CHUM - Centre hospitalier de l'Université de Montréal
Montreal, Quebec, Canada
Summary
🤩
Rockstar🎓
Top SchoolJean-François Pombert is a computational genomics specialist with over a decade of experience bridging high-throughput sequencing, bioinformatics pipeline automation, and molecular wet-lab practice. With a PhD in biochemistry from Université Laval and academic leadership roles at the Illinois Institute of Technology, he combines deep research credentials with hands-on protocol optimization and genetic data analysis in clinical settings. Fluent in Perl, Python and Bash, he has taught genomics workshops internationally and served as an academic editor, reflecting a commitment to community training and reproducible science. Now based in Montreal at CHUM, he applies this blend of wet- and dry-lab expertise to streamline sequencing workflows and implement scalable computational solutions for clinical biology.
11 years of coding experience
12 years of employment as a software developer
Doctor of Philosophy (Ph.D.), Biochemistry, Doctor of Philosophy (Ph.D.), Biochemistry at Université Laval
French, English
Github Skills (20)
genome10
package-management10
conda10
ncbi10
3d-structure10
pdb-files10
genbank10
bioinformatics10
genome-annotation10
proteins10
pipeline9
bioconda9
sequence9
genomics9
transform9
Programming languages (3)
Github contributions (5)
PombertLab/A2GB
Oct 2020 - Nov 2022
A2GB is a pipeline that will transform the genome annotation files exported from Apollo in preparation for sequence submission to NCBI’s GenBank.
Contributions:3 releases, 370 commits, 5 PRs in 2 years 1 month
sequencegenomepreparationpipelinencbi
PombertLab/Publication_scripts
Apr 2016 - Dec 2022
Contributions:55 commits, 62 pushes, 2 branches in 6 years 9 months
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