Jean Mainguy
Research Engineer In Bioinformatics
Toulouse, Occitania, France
Summary
🤩
Rockstar🎓
Top SchoolJean Mainguy is a research engineer in bioinformatics based in Toulouse with nine years of experience translating biological questions into reproducible computational solutions. Currently at Genoscope after progressing there from a bioinformatics engineer role, he brings deep expertise in genome analysis and sequencing workflows developed at national research centers like INRAE and Genoscope. His background includes method development for viral polyprotein annotation during a research internship at the University of Vienna, reflecting strength in algorithmic annotation and virus genomics. Trained with a Master’s in Bioinformatics from Université de Bordeaux and a biology bachelor from Paris-Sud, he combines wet-lab literacy with robust computational practice. Known for bridging research and production, he focuses on reliable pipelines and scalable data processing rather than flashy tooling. Colleagues value him for turning complex sequencing data into actionable biological insight while maintaining reproducibility and rigor.
9 years of coding experience
7 years of employment as a software developer
Biology Bachelor, Biology Bachelor at Paris-Sud University (Paris XI)Master's degree, Bioinformatics, Master's degree, Bioinformatics at Université de Bordeaux
Github Skills (55)
package-management10
microbiology10
graph10
conda10
genomes10
microbial-genomics10
bioinformatics10
genomics10
bacteria10
bioconda10
comparative-genomics10
aggregate9
fastq9
metagenomics9
pypi9
Programming languages (7)
Github contributions (5)
JeanMainguy/viral_polyprotein_annotation
Jun 2018 - Feb 2019
Contributions:195 commits, 63 pushes, 1 branch in 8 months
genotoul-bioinfo/Binette
Jan 2023 - Mar 2025
A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
Contributions:16 releases, 61 PRs, 211 pushes in 2 years 2 months
bioinformatics-toolmetagenomicsmetagenomics-binningmicrobiology
Find and Hire Top DevelopersWe’ve analyzed the programming source code of over 60 million software developers on GitHub and scored them by 50,000 skills. Sign-up on Prog,AI to search for software developers.