Jean-philippe Villemin
Postdoctoral Researcher at IRCM - Institut de Recherche en Cancérologie de Montpellier
Montpellier, Occitania, France
Summary
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Senior🎓
Top SchoolJean-philippe Villemin is a bioinformatics software engineer and postdoctoral researcher with over a decade of experience bridging cancer genomics, epigenetics, and scalable computational tooling. He combines a PhD in Bioinformatics and dual MSc degrees with strong software engineering skills—advanced SQL/schema design, Python/Perl scripting, R analytics, Java web frameworks, and containerized deployment—to build reproducible pipelines, databases and web interfaces for NGS and spatial transcriptomics projects. At IRCM he applies these strengths to decipher tumor heterogeneity and single‑cell/spatial transcriptomics, having previously developed and maintained Galaxy integrations, Bioconductor packages and production pipelines for clinical sequencing. Known for pragmatic optimization and monitoring expertise, he pairs hands-on tuning of databases and HPC job schedulers with a continuous integration mindset to deliver robust research software. Based in Montpellier, he blends deep domain knowledge of alternative splicing and epigenetics with practical engineering to move complex analyses from prototype to clinic-ready workflows.
10 years of coding experience
6 years of employment as a software developer
PhD's degree Bioinformatics, PhD's degree Bioinformatics at University of Montpellier
English, French
Github Skills (97)
rna-seq10
os-agnostic10
ecosystem9
linux9
julia9
science9
package-management9
python9
seq9
fusion9
conda9
biomart8
nextflow8
base-r8
spatially-resolved-transcriptomics8
Programming languages (11)
Github contributions (5)
ZheFrench/pics
Oct 2016 - Jan 2023
Contributions:39 pushes, 1 branch in 6 years 4 months
ZheFrench/BulkSignalR
Sep 2021 - Oct 2024
Contributions:74 pushes, 1 branch in 3 years 2 months
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