Jeff Cole
Senior Bioinformatics Engineer
Austin, Texas, United States
Summary
👤
Senior🎓
Top SchoolJeff Cole is a Senior Bioinformatics Engineer and computational molecular biologist with a decade of experience building ML-driven bioinformatics software to discover novel antimicrobial peptides. Based in Austin, he combines deep expertise in evolutionary genomics and toxin evolution with production-grade engineering skills in Python, R, Go, and Linux. His work includes automated pipelines for mining bacterial genomes, ML models predicting peptide toxicity, and APIs that make protein language models (BERT, ESM) accessible as pandas-friendly tools. Now at Bio-Techne after a postdoc at UT Austin, he bridges academic rigor and industry delivery—often translating complex evolutionary insights into scalable, reproducible software. An unexpected strength is his ability to operationalize cutting-edge protein language models into practical discovery workflows that accelerate antimicrobial research.
9 years of coding experience
1 year of employment as a software developer
Bachelor of Science - BS, Biology, General, Bachelor of Science - BS, Biology, General at Samford UniversityDoctor of Philosophy - PhD, Biology, General, Doctor of Philosophy - PhD, Biology, General at East Carolina University
Github Skills (119)
package-management10
seq10
rna-seq10
conda10
fusion10
bioinformatics10
nextflow9
pipeline9
bioconda9
fasta8
tuning-parameters8
journal8
computational-biology8
genomics8
nf-core8
Programming languages (12)
Github contributions (5)
tijeco/venom_codon_usage
Nov 2019 - Dec 2020
Contributions:184 pushes, 1 branch, 9 issues in 1 year 1 month
tijeco/cluck
May 2017 - Aug 2020
Contributions:79 pushes, 1 branch in 3 years 4 months
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