Jeremy Miller
Senior Scientist - Neuroscience at Allen Institute
Seattle, Washington, United States
Summary
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Senior🎓
Top SchoolJeremy Miller is a Senior Scientist at the Allen Institute with eight years of focused experience mapping gene expression across developing mammalian brains using large-scale human, mouse, and primate atlases. He combines a PhD in Neuroscience from UCLA with a quantitative background in math and astronomy to bring computational rigor to neurodevelopmental and disease-related gene expression analysis. His prior work includes modeling retinal ganglion cell dynamics at Los Alamos and dissecting hippocampal transcriptional changes in Alzheimer’s during graduate and postdoc training. Based in Seattle, he blends computational data analysis with experimental insight to translate complex atlases into testable biological hypotheses. Colleagues describe him as optimistic about solving the brain at astronomical timescales—reflecting both ambition and a wry appreciation for scientific timelines.
8 years of coding experience
BA/BS, Math, Astronomy, BA/BS, Math, Astronomy at University of MarylandUniversity of California, Los Angeles
Github Skills (38)
iterative10
transcriptomics10
dendrogram10
umbrella9
hierarchical9
semantics9
ontology9
semantic-web9
seq9
bioinformatics9
nomenclature9
monarchinitiative9
clustering9
owl9
genomics9
Programming languages (5)
Github contributions (5)
AllenInstitute/L5_VEN
Mar 2019 - Jul 2022
Contributions:43 commits, 10 pushes in 3 years 5 months
AllenInstitute/ACE
Dec 2023 - Mar 2025
R Shiny app for comparison of annotations (e.g., cell type assignments)
Contributions:2 releases, 4 PRs, 91 pushes in 1 year 2 months
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