Jeremy Swann
Senior Research Software Engineer at UK Atomic Energy Authority
Vale of White Horse, England, United Kingdom
Summary
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Senior🎓
Top SchoolJeremy Swann is a Senior Research Software Engineer with eight years of experience building HPC infrastructure, metadata databases, containers and bioinformatics pipelines to support Nanopore sequencing and other research workflows. He holds a PhD in Computing from the University of Leeds and has a strong track record of translating multidisciplinary research needs into robust software—previously enabling interactive registration and visualization of 3D histology and MRI volumes at Leeds and Linköping. Jeremy combines low-level visualization and registration expertise (Qt/C++/OpenGL) with modern infrastructure skills, making him equally comfortable prototyping research tools and productionizing pipelines on cluster environments. Now at the UK Atomic Energy Authority, he applies that pragmatic, research-focused engineering approach to large-scale scientific computing problems. An understated strength is his history of iterative collaboration with clinicians and imaging specialists, which informs software that balances usability with technical rigour.
8 years of coding experience
7 years of employment as a software developer
Doctor of Philosophy (PhD) Computing, Doctor of Philosophy (PhD) Computing at University of LeedsA Levels Computing Business Studies Maths, A Levels Computing Business Studies Maths at Cheadle and Marple Sixth Form CollegeHazel Grove High School
Stackoverflow
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Github Skills (41)
pathogen8
infectious-diseases8
sequencing8
bioinformatics8
next-generation-sequencing7
computational-physics7
nextflow7
cluster-computing7
pipeline7
code-generation7
mechanics7
genomics7
hydrodynamics7
computational-fluid-dynamics6
fluid-dynamics6
Programming languages (8)
Github contributions (5)
oxfordmmm/ncov2019-artic-nf
Jun 2021 - Jun 2022
A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
Contributions:32 releases, 5 reviews, 108 commits in 1 year
nextflow-pipelinepipelinenextflowbioinformaticsartic
GlobalPathogenAnalysisService/SARS-COV-2_environments
Jun 2021 - Aug 2022
Contributions:137 releases, 58 commits, 29 PRs in 1 year 2 months
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