Jermiah Joseph
Research Development Software Developer at Pinnacle
Toronto, Ontario, Canada
Summary
🤩
Rockstar🎓
Top SchoolJermiah Joseph is a research-focused software developer with seven years of experience building reproducible bioinformatics and pharmacogenomics pipelines for academic and medical research. He has led cloud and HPC migrations, engineered Snakemake/Nextflow ETL workflows, and developed user-facing R and Python packages that integrate diverse biomedical resources like PubChem, UniProt, and DrugBank. His background in medical biophysics and hands-on work with physiology-based C/C++ models and large-scale simulations gives him a rare blend of computational modeling and production-grade software engineering. Jermiah also has experience designing hardware and microcontroller solutions when off-the-shelf tools were unavailable, reflecting a practical, problem-first approach. Now at Pinnacle, he focuses on research development software that scales from lab reproducibility to cloud deployment while maintaining accessible tooling for scientists.
7 years of coding experience
7 years of employment as a software developer
Master of Science - MS, Medical Biophysics, Master of Science - MS, Medical Biophysics at Western University
Github Skills (75)
snakemake10
forge10
package-manager-tool10
medical10
nifti10
nrrd10
workflow-management10
dicom10
medicine10
rust-lang9
rust9
image-processing9
package-management9
python9
datasets9
Programming languages (11)
Github contributions (5)
jjjermiah/nbia-toolkit
Nov 2023 - Apr 2025
Python package for programmatic access to the National Biomedical Imaging Archive (NBIA) and The Cancer Imaging Archive (TCIA)
Contributions:3 releases, 4 reviews, 165 PRs in 1 year 4 months
api-clientdicomdicom-imagesidcmedical-imaging-database
jjjermiah/snakemake
Mar 2024 - Mar 2025
Contributions:1 release, 12 PRs, 123 pushes in 1 year
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