Jessica Bonnie
PhD Candidate Researcher
Washington DC-Baltimore Area United States
Summary
👤
Senior🎓
Top SchoolJessica Bonnie is a computational genomics researcher and PhD candidate at Johns Hopkins with 11 years of experience applying data science and software engineering to large-scale genomic problems. She specializes in genomic sketching and similarity metrics, bringing mathematical rigor and multi-language systems engineering to assembly comparison and population-scale analyses. Previously a lead data scientist at Booz Allen, she built multi-tool pipelines and automated workflows that reduced human error and accelerated production analyses across varied domains. A certified Software Carpentry instructor, she pairs clear pedagogy with hands-on coding in Python, Bash, R and C to make complex methods accessible to collaborators. Her background in high-throughput genotyping and building tailored analytic toolchains gives her a practical edge in turning theoretical methods into reproducible, efficient software.
12 years of coding experience
4 years of employment as a software developer
Bachelor of Arts (B.A.), Mathematics, Bachelor of Arts (B.A.), Mathematics at Goucher CollegeDoctor of Philosophy - PhD, Computer Science, Doctor of Philosophy - PhD, Computer Science at Johns Hopkins Whiting School of EngineeringUniversity of Virginia
French, Spanish, Latin
Github Skills (24)
sequence-analysis9
estimate9
sequence9
genomics9
stable8
disk-based8
dplyr7
shell6
automation6
sparklyr6
python6
unix6
r6
livy5
ide5
Programming languages (6)
Github contributions (5)
realviacauchy/GWAS-Pipedream
Apr 2015 - Mar 2021
Contributions:31 pushes, 3 comments, 5 issues in 6 years
realviacauchy/Farewell_CPHG
Oct 2015 - Mar 2021
Contributions:8 pushes, 1 branch in 5 years 6 months
Find and Hire Top DevelopersWe’ve analyzed the programming source code of over 60 million software developers on GitHub and scored them by 50,000 skills. Sign-up on Prog,AI to search for software developers.