Jianshu Zhao
Postdoctoral Researcher at University of California, San Diego
San Diego, California, United States
Summary
👤
Senior🎓
Top SchoolJianshu Zhao is a postdoctoral researcher at UC San Diego with a PhD in Bioinformatics from Georgia Tech and eight years of experience building high-performance bioinformatics tooling. He specializes in applying probabilistic data structures and streaming algorithms to microbiome, genomics, and metagenomics problems, with a practical focus on parallel and concurrent systems to process terabytes of sequencing data efficiently. A Rust-first developer, he contributes to infrastructure like the bioconda-recipes repository—helping package Rust-based bioinformatics tools and solve cross-platform build and licensing challenges. His background in environmental science and engineering from Tsinghua informs a data-driven perspective on microbial ecology, blending rigorous research with production-ready software engineering.
8 years of coding experience
University of California San DiegoDoctor of Philosophy - PhD, Bioinformatics, Doctor of Philosophy - PhD, Bioinformatics at Georgia Institute of TechnologyMaster's degree, Environmental Science and Engineering, Master's degree, Environmental Science and Engineering at Tsinghua University
Github Skills (9)
bioinformatics10
conda10
rust10
package-management10
automation6
automations6
automation-testing6
dockers5
docker5
Programming languages (24)
Github contributions (5)
bioconda/bioconda-recipes
Feb 2023 - Mar 2025
Conda recipes for the bioconda channel.
Role in this project:
Backend & DevOps Engineer
Backend & DevOps EngineerContributions:1 review, 51 PRs, 112 comments in 2 years 1 month
Contributions summary:Jianshu primarily contributed to the development of Conda recipes within the bioconda-recipes repository. Their work involved creating and updating recipes for bioinformatics software, particularly those utilizing Rust for build and install procedures. The user's contributions also include incorporating features and dependencies, along with integrating third-party licenses and addressing platform-specific build issues within the context of a conda environment.
recipescondabiocondabioinformaticspackage-management
jianshu93/metaT_directionality_check
Sep 2021 - Mar 2023
comparison of methods to check DNA contamination during RNA sequencing (or metatranscriptomic sequencing)
Contributions:1 review, 1 PR, 54 pushes in 1 year 6 months
dnacomparisoncontaminationsequencinggenomics
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