Joachim Johansen
Science Manager at Novonesis
Copenhagen, Capital Region of Denmark
Summary
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Senior🎓
Top SchoolJoachim Johansen is a Science Manager and PhD-trained bioinformatician with nine years of experience specializing in microbiome, virome and multi-omics integration. He combines deep learning and applied machine learning with high-performance cloud engineering to translate metagenomic and immunopeptidome data into biological insights. His work ranges from developing unsupervised deep models for microbial entity discovery to phage genomics and immune-epitope prioritization at institutions including the Broad Institute and the Novo Nordisk Foundation Center. At Clinical Microbiomics he led metagenomics pipelines and phage-focused ML efforts, and he now directs scientific strategy and execution at Novonesis. Comfortable bridging academia and industry, he pairs rigorous statistical training with practical pipeline optimization for large-scale datasets. A less obvious strength is his track record in science outreach and program management, having led education initiatives and fundraising alongside technical research.
9 years of coding experience
7 years of employment as a software developer
Doctor of Philosophy - PhD, Bioinformatics and Biostatistics - Human Microbiome, Doctor of Philosophy - PhD, Bioinformatics and Biostatistics - Human Microbiome at Københavns Universitet - University of CopenhagenMSc. Eng. Bioinformatics and Systems Biology, Biomathematics, Bioinformatics, and Computational Biology, MSc. Eng. Bioinformatics and Systems Biology, Biomathematics, Bioinformatics, and Computational Biology at Danmarks Tekniske Universitet
Stackoverflow
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Github Skills (7)
health9
binning9
bioinformatics9
docker8
singularity8
metagenomics7
simulation6
Programming languages (2)
Github contributions (5)
RasmussenLab/phamb
Jul 2020 - Oct 2022
Downstream processing of VAMB binning for Viral Elucidation
Contributions:2 releases, 80 commits, 28 PRs in 2 years 3 months
binningviraldownstream
joacjo/docker-builds
Feb 2021 - May 2021
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
Contributions:24 pushes in 3 months
healthdockerpublic-healthbioinformaticswhale
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