Johannes Alneberg
Team Leader Bioinformatics
Stockholm, Sweden
Summary
🤩
Rockstar🎓
Top SchoolJohannes Alneberg is a team leader in bioinformatics with 13 years’ experience bridging computational research and production genomics at KTH and SciLifeLab in Stockholm. He completed a PhD in bioinformatics and has progressed from systems developer and web application roles to leading bioinformatics teams and research projects, specializing in metagenomics and machine learning. Johannes combines deep academic expertise with hands-on systems development, enabling reproducible pipelines and scalable analysis for large sequencing datasets. Based in Stockholm, he is comfortable moving between research and operational delivery, translating novel methods into tools that serve both scientists and bioinformatics infrastructure. A mathematician by training, he brings rigorous quantitative thinking to complex biological data problems.
13 years of coding experience
2 years of employment as a software developer
Doctor of Philosophy - PhD, Bioinformatics, Doctor of Philosophy - PhD, Bioinformatics at KTH Royal Institute of TechnologyBachelor of Science (BS), Mathematics, Bachelor of Science (BS), Mathematics at Uppsala University
Swedish, English
Stackoverflow
1reputation
0reached
0answers
0questions
Github Skills (111)
composition10
dataflow10
variants10
slurm10
python10
package-management10
coverage10
pipeline-framework10
immunology10
microbiome10
linter10
linting10
genomics10
clustering10
nf-core10
Programming languages (11)
Github contributions (5)
alneberg/dds_web
May 2021 - May 2022
A cloud-based system for the delivery of data from SciLifeLab Facilities to their users (e.g. research group).
Contributions:2 reviews, 3 PRs, 125 pushes in 11 months
djangopythonresearch-groupfacilities
alneberg/Sarek
Aug 2018 - Mar 2023
Detect germline or somatic variants from normal or tumour/normal whole-genome sequencing data
Contributions:27 pushes, 12 branches in 4 years 7 months
whole-genome-sequencinggenomesequencing-datanormalsequencing
Find and Hire Top DevelopersWe’ve analyzed the programming source code of over 60 million software developers on GitHub and scored them by 50,000 skills. Sign-up on Prog,AI to search for software developers.