John Anderson
Software Engineering Manager at Natera
Salem, Oregon, United States
Summary
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Rockstar🎓
Top SchoolJohn Anderson is a seasoned software engineering manager and systems architect with nearly two decades of experience leading teams to build scalable, open-source–based infrastructure and bioinformatics platforms. He combines hands-on development with executive leadership, having led engineering organizations at Neochromosome/Opentrons and now managing software teams at Natera. His background spans full-stack web apps, large-scale data processing in AWS (including petabyte-scale bioinformatics pipelines), and custom LIMS design using modern stacks like Typescript/Svelte and serverless architectures. An active open-source contributor, he has made lasting contributions to BioPerl and MetaCPAN and even enhanced developer tooling via Emacs customizations. Based in Salem, Oregon, he pairs academic training in molecular biology and bioinformatics with practical cost-saving results—most notably a 40% reduction in AWS spend while renovating high-volume genomic processing workflows.
18 years of coding experience
18 years of employment as a software developer
The University of ArizonaIRTA Postdoctoral Fellow, Bioinformatics, IRTA Postdoctoral Fellow, Bioinformatics at National Center for Biotechnology Information (NCBI)BS, Biology, BS, Biology at University of Iowa
Stackoverflow
138,188reputation
5.8mreached
52answers
6questions
git
top-1%
buffer
top-5%
emacs
top-5%
undo
top-1%
Github Skills (36)
git10
javascript10
text-editor10
configuration-management10
bioperl10
perl10
editor10
cpan10
emacs-lisp10
toolkits10
customisation10
bioinformatics10
undo10
metacpan10
web-development10
Programming languages (20)
Github contributions (5)
metacpan/metacpan-web
Jul 2011 - Jan 2013
Web interface for MetaCPAN
Role in this project:
Full-stack Developer
Full-stack DeveloperContributions:8 commits, 1 issue in 1 year 5 months
Contributions summary:John primarily focused on improving the user interface and functionality of the MetaCPAN web interface. Their work included enhancing the display of source code by adding line-specific linking and modifying the behavior of module source views. They also made improvements to navigation and user experience by adding links to related resources like the author's CPAN directory and fixing UI issues. Furthermore, they addressed bug fixes and code improvements within the core application.
cpanmetacpanperlweb-interface
bioperl/bioperl-live
Jul 2010 - Aug 2010
Core BioPerl 1.x code
Role in this project:Back-end Developer
Back-end DeveloperContributions:1 review, 14 commits, 1 comment in 1 month
Contributions summary:John's primary contributions involve modifying and merging code within the BioPerl 1.x code repository. The commits demonstrate debugging efforts, specifically addressing exceptions within scripts and updating code to handle different scenarios. The changes made within the Bio::Ontology and Bio::OntologyIO packages suggest focus on improving and integrating ontology-related features.
bioperlpdb-filesbiologytoolkitbioinformatics
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