John Caskey
Data Engineer
Madison, Wisconsin, United States
Summary
👤
Senior🎓
Top SchoolJohn Caskey is a Data Engineer and seasoned data scientist with 11 years of experience applying computational biology, machine learning, and statistical methods to complex genomics and clinical datasets. At UW–Madison he builds production-ready pipelines and databases, including variant-calling workflows and LabKey systems, and has led ML projects for sepsis prediction and NLP-driven COVID contact tracing. Comfortable across Python, C++, Swift and R, he pairs hands-on software development with deep domain expertise in NGS, RNASeq, and biostatistics to translate between wet-lab scientists and computational teams. He routinely manages 5–15 cross-disciplinary projects concurrently and has a track record of turning bespoke research tools (including mobile apps and automation scripts) into scalable, reproducible workflows. Notably, his background spans both academic rigor (PhD in Biomedical Sciences) and practical productization, enabling rapid, creative solutions under pressure that prioritize accuracy and operational efficiency.
11 years of coding experience
14 years of employment as a software developer
Doctor of Philosophy (PhD) Biomedical Sciences, Doctor of Philosophy (PhD) Biomedical Sciences at Tulane UniversityBachelor of Science (B.S.) Biology, Bachelor of Science (B.S.) Biology at Florida Atlantic UniversityBachelor of Arts (B.A.) European History, Bachelor of Arts (B.A.) European History at The University of the South
French
Stackoverflow
1reputation
0reached
0answers
0questions
Github Skills (20)
macos6
windows6
linux6
javascript6
editor5
electron5
biology4
text-editor4
sicp4
science4
stable3
keras3
r-package3
atlas3
machine-learning3
Programming languages (3)
Github contributions (5)
disulfidebond/cDNA_to_gDNA
May 2019 - May 2019
Contributions:18 commits, 17 pushes, 1 branch in 14 days
disulfidebond/agripa
Nov 2016 - Feb 2020
Contributions:4 PRs, 5 pushes, 6 branches in 3 years 3 months
bioinformaticsgenomicannotationparsing
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