John Everett
Director Of Bioinformatics
Greater Philadelphia United States
Summary
👤
Senior🎓
Top SchoolJohn Everett is a Director of Bioinformatics with 15+ years translating structural biology and genomics into production-scale software and infrastructure for academia and biotech. He led a $60M NIH structural genomics consortium that delivered over 1,000 protein structures and built the custom LIMS that linked bench robotics, public repositories, and data pipelines. At the University of Pennsylvania he directs bioinformatics teams and has developed R/Python/Docker pipelines used in ~20 clinical trials to map AAV and lentiviral integrations, track SARS-CoV-2 variants, and profile RNAseq. He combines deep domain expertise in viral vector integration, CRISPR, and protein structure with practical data-management and cloud deployment skills, enabling translational projects from sample tracking to regulatory-grade analyses. An unusually hands-on leader, he bridges wet lab workflows and scalable computation, and his work underpins both high-throughput structural biology and contemporary gene-therapy monitoring.
11 years of coding experience
1 year of employment as a software developer
BA, Biochemistry & Psychology, BA, Biochemistry & Psychology at Rutgers, The State University of New Jersey-New BrunswickDoctor of Philosophy - PhD, Biochemistry, Doctor of Philosophy - PhD, Biochemistry at Rutgers University
Github Skills (16)
combinations5
genomics3
permutation3
forking3
bioinformatics3
factorization3
genome3
react2
cloning2
combinatorics2
marker2
designer2
mathematics1
parallel1
number-theory1
Programming languages (3)
Github contributions (5)
helixscript/AAVengeR
Sep 2021 - Dec 2025
Contributions:5 releases, 220 pushes, 3 branches in 4 years 3 months
BushmanLab/intSiteCaller
Jun 2016 - Jan 2021
Contributions:41 commits, 1 PR, 44 pushes in 4 years 8 months
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