John Sundh
Bioinformatician
Karlstad, Värmland County, Sweden
Summary
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RockstarJohn Sundh is a bioinformatician with 11 years of experience, based in Karlstad, Sweden, who specializes in metagenomics, reproducible research, and building robust Snakemake workflows. Working with NBIS Sweden, he focuses on turning complex sequencing data into reproducible pipelines and practical insights for research teams. He blends computational rigor with workflow engineering, emphasizing portability and traceability across analyses. Although primarily research-focused, his GitHub presence signals an active commitment to open science and tooling that helps others reproduce results. Colleagues value his ability to bridge domain biology and scalable software practices, often simplifying messy datasets into maintainable pipelines.
11 years of coding experience
Github Skills (79)
snakemake10
package-management10
genomes10
microbiome10
nextflow10
pipeline10
bioconda10
sequence-analysis10
elixir10
conda10
sequencing10
metagenomics10
reproducible-research10
assembly10
bioinformatics10
Programming languages (11)
Github contributions (5)
EnvGen/B1-Ocean
May 2022 - Mar 2024
Contributions:1 release, 4 PRs, 65 pushes in 1 year 10 months
NBISweden/deepbio_geneflow
May 2020 - Apr 2021
Analyzing gene flow in the deep biosphere via “multi-omics” integrated analysis
Contributions:16 PRs, 93 pushes, 14 branches in 11 months
analyzingintegratedmulti-omicsomicsgenomics
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