John Sundh
Bioinformatician
Karlstad, Värmland County, Sweden
Summary
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RockstarJohn Sundh is a bioinformatician with 11 years of experience, based in Karlstad, Sweden, who specializes in metagenomics, reproducible research, and building robust Snakemake workflows. Working with NBIS Sweden, he focuses on turning complex sequencing data into reproducible pipelines and practical insights for research teams. He blends computational rigor with workflow engineering, emphasizing portability and traceability across analyses. Although primarily research-focused, his GitHub presence signals an active commitment to open science and tooling that helps others reproduce results. Colleagues value his ability to bridge domain biology and scalable software practices, often simplifying messy datasets into maintainable pipelines.
11 years of coding experience
Github Skills (90)
snakemake10
package-management10
genomes10
immunology10
microbiome10
hex10
nextflow10
pipeline10
bioconda10
sequence-analysis10
elixir10
conda10
sequencing10
metagenomics10
reproducible-research10
Programming languages (11)
Github contributions (5)
insect-biome-atlas/happ
May 2022 - Apr 2025
Workflow to run and evaluate clustering of ASV sequences into OTUs
Contributions:3 releases, 23 PRs, 295 pushes in 2 years 10 months
evaluateasvclusteringotusworkflow
EnvGen/metagenomics-workshop
Nov 2014 - Nov 2016
Contributions:187 commits, 85 pushes, 2 comments in 2 years
metagenomicsworkshop
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