Jon Badalamenti

Project Manager at University of Minnesota Genomics Center

Minneapolis, Minnesota, United States
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Summary

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Senior
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Jon Badalamenti is a project manager and microbiologist with 11 years of experience designing and delivering bespoke next-generation sequencing projects at the University of Minnesota Genomics Center. He combines deep expertise in genomics and bioinformatics with hands-on experience applying long-read sequencing to uncover hidden microbial functions, translating complex multi-omics datasets into actionable insights for academic and industry clients. Jon’s background as a postdoctoral researcher in environmental microbiology gives him a pragmatic understanding of experimental design, sample handling, and computational analysis pipelines. Based in Minneapolis, he is particularly focused on emerging long-read applications across environmental monitoring, public health, agriculture, and defense, and is adept at bridging wet-lab challenges with scalable bioinformatics solutions. An underappreciated strength is his ability to consult across sectors, tailoring sequencing strategies to diverse regulatory and operational constraints.
code11 years of coding experience
job4 years of employment as a software developer
bookDoctor of Philosophy - PhD, Microbiology, General, Doctor of Philosophy - PhD, Microbiology, General at Arizona State University
bookBachelor of Science - BS, Biochemistry and Molecular Biology, Bachelor of Science - BS, Biochemistry and Molecular Biology at Penn State University
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Stackoverflow

Stats
1reputation
77reached
0answers
1question
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Github Skills (44)

bacteria10
genome-annotation10
microbiology9
genome9
pan9
genbank9
bioinformatics9
linuxbrew9
genome-analysis9
pathogen9
genomics9
fasta9
population-genetics8
clustering8
stable8

Programming languages (5)

ShellPerlHTMLRubyPython

Github contributions (5)

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jbadomics/tnseq

Jan 2016 - Feb 2016

Contributions:5 commits, 4 PRs, 95 pushes in 1 month
analyzingseq
jbadomics/install_help

Oct 2016 - Oct 2016

Contributions:1 commit, 52 pushes, 2 branches in 1 day
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Jon Badalamenti - Project Manager at University of Minnesota Genomics Center