Jonathan Bloom

Senior Lecturer at Massachusetts Institute of Technology

Arlington, Massachusetts, United States
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Summary

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Jonathan Bloom is a senior lecturer and mathematician with 11 years of interdisciplinary experience at the intersection of topology, machine learning, and computational biology. He has led ML teams and platforms at Cellarity and co-founded Hail and the Models, Inference & Algorithms (MIA) initiative at the Broad Institute, driving open benchmarks and NeurIPS competitions for multimodal single-cell data. At MIT he designs courses that blend visual, computational, and real-world problem solving while supervising undergraduate research and proving theorems in Floer and knot homology. Jonathan bridges deep theory and production practice—publishing work on the topology of regularized autoencoders and scaling genomics tooling—while also building community (Boston Bits in Bio, Flagship Neural Network). He holds a PhD in mathematics, has taught globally as a traveling fellow, and quietly pairs high-diopter curiosity with a knack for turning abstract math into usable data-science education and biotech tooling.
code11 years of coding experience
job6 years of employment as a software developer
bookBachelor of Arts (B.A.) Mathematics, Bachelor of Arts (B.A.) Mathematics at Harvard University
bookDoctor of Philosophy (PhD) Mathematics, Doctor of Philosophy (PhD) Mathematics at Columbia University
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Stackoverflow

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Github Skills (44)

hail10
genetics10
genome10
python10
dataframes10
autoencoder10
dataframe10
gwas10
sequencing10
bioinformatics10
genomics10
cloud-native10
r9
spark9
linear-regression9

Programming languages (8)

JavaC++CSSTeXScalaHTMLJupyter NotebookPython

Github contributions (5)

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jbloom22/hail

Aug 2016 - Jul 2019

Hail, a scalable framework for genomic data analysis
Contributions:2 PRs, 1560 pushes, 521 branches in 3 years
scalabledata-analysispythonpipelinegenomic-data-analysis
jbloom22/DASH

Jan 2019 - Mar 2022

Secure multi-party linear regression at plaintext speed
Contributions:69 commits, 4 PRs, 68 pushes in 3 years 2 months
linear-regression
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