Jonathan Rubin
Data Scientist Consultant
Lafayette, Colorado, United States
Summary
👤
Senior🎓
Top SchoolJonathan Rubin is a Data Scientist Consultant and computational biologist with a Ph.D. in Biochemistry and a decade of experience turning complex cellular datasets—genomics, proteomics, metabolomics, and imaging—into actionable insights. He designs and implements automated data pipelines and LIMS-driven workflows that feed curated data into warehouses for downstream analysis and visualization. Comfortable working independently in fast-moving biotech environments, he has held successive senior computational roles across startups and scale-ups, bridging experimental work and algorithm development. Proficient in Python and R, Jonathan pairs deep domain knowledge of cellular biology with hands-on lab experience to validate computational findings. Based in Lafayette, Colorado, he brings a practical blend of research rigor and production engineering that accelerates translational biology projects. An effective communicator, he specializes in translating technical complexity for diverse stakeholders to drive measurable outcomes.
10 years of coding experience
3 years of employment as a software developer
Bachelor's Degree, Computational Biology, Bachelor's Degree, Computational Biology at Cornell UniversityDoctor of Philosophy (Ph.D.), Biochemistry, Doctor of Philosophy (Ph.D.), Biochemistry at University of Colorado Boulder
English, Spanish
Github Skills (15)
transcription10
factor10
feed8
python-app8
python7
nuitka6
executable6
genome4
compiler4
genomics3
bioinformatics3
bedtools1
rna-seq1
seq1
chip-seq1
Programming languages (3)
Github contributions (5)
jdrubin91/Map
Apr 2016 - Oct 2018
Contributions:239 pushes, 1 branch in 2 years 6 months
jdrubin91/BidirectionalTFAnalyzer
Oct 2015 - May 2016
Contributions:347 pushes, 1 branch in 7 months
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