Josef Hardi

Senior Software Engineer at Stanford Division of Computational Medicine

Palo Alto, California, United States
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Summary

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Rockstar
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Josef Hardi is a seasoned software engineer with 15 years of experience building and maintaining research-grade and production systems, currently contributing to computational medicine projects at Stanford and long-term work on Protégé and CEDAR to improve biomedical data interoperability. He blends a strong academic background in software engineering with hands-on open-source experience—having contributed backend fixes to the well-regarded Ontop Virtual Knowledge Graph project and authored a Java semantic-mapping library used in his startup. Josef specializes in integrating intelligent automation and LLM-driven workflows into existing tooling, with practical familiarity in agentic tools and best practices for applying AI to boost researcher productivity. Comfortable across backend systems, semantic web technologies, and data engineering, he also has a track record in open data advocacy and building pragmatic solutions for government and research domains.
code15 years of coding experience
job5 years of employment as a software developer
bookMaster, Software Engineering, Master, Software Engineering at Free University of Bozen-Bolzano
bookMaster, Software Engineering, Master, Software Engineering at Blekinge Institute of Technology
bookBachelor, Computer Science, Bachelor, Computer Science at University of Indonesia
languagesEnglish, Indonesian, Italian
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Github Skills (7)

javas10
datalog10
java10
software-design8
logic-programming7
debugging7
debug7

Programming languages (10)

JavaShellMakefilePLpgSQLJavaScriptHTMLMermaidJupyter Notebook

Github contributions (5)

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ontop/ontop

Oct 2010 - Aug 2013

Ontop is a platform to query relational databases as Virtual RDF Knowledge Graphs using SPARQL
Role in this project:
userBackend Developer
Contributions:655 commits, 4 comments, 3 issues in 2 years 10 months
Contributions summary:Josef's contributions focused on modifying the code related to the `org.obda.query.domain` package by removing an unused interface. The user also improved the accessibility of the `arity` variable, modifying its access modifier from private to protected. Furthermore, the changes reveal an involvement in the Datalog grammar, including bug fixes for identifying variables within the body and modifications to related test cases.
knowledge-graphsemantic-webknowledge-graphsrelational-databasesrelational
The application programming interface (API) module of the IEC Spreadsheet Validator tool
Contributions:1 release, 50 pushes, 1 branch in 1 year 8 months
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Josef Hardi - Senior Software Engineer at Stanford Division of Computational Medicine