Joseph Estabrook
Happy Valley, Oregon, United States
Summary
👤
Senior🎓
Top SchoolJoseph Estabrook is a Software Quality Engineer and bioinformatics specialist with over a decade of experience building and validating genomic pipelines for clinical and research applications. He has driven end-to-end validation of complex OGM, NGS, methylation, CNV, and SV workflows, integrating multi-platform data and supporting regulated releases (IVDR). Comfortable in Python, R, Unix, Nextflow/Snakemake and cloud-native stacks, Joseph bridges computational biology and production-quality software through reproducible pipelines and automated QC frameworks. He has a track record of translating biological questions into robust tooling—ranging from transcription factor inference methods to decision-tree logic for genomic event classification. Notably, he has collaborated with industry partners (Illumina, Vertex) to integrate diverse datasets and inform regulatory-grade analyses. Based in Happy Valley, OR, he pairs practical lab experience and a Master’s in Bioinformatics with a strong emphasis on traceable, auditable validation practices.
9 years of coding experience
10 years of employment as a software developer
Master's degree Bioinformatics, Master's degree Bioinformatics at University of Oregon
Spanish
Github Skills (20)
forge8
genomics6
cran6
bioinformatics6
single-cell-genomics4
conda-forge4
conda4
datasets4
pipeline4
genome2
bioconductor2
python1
plot1
simulation1
modular1
Programming languages (6)
Github contributions (5)
ohsu-comp-bio/regulon-enrichment
Apr 2019 - Jul 2022
Contributions:61 commits in 3 years 4 months
ohsu-cedar-comp-hub/causal-path-pipeline
Mar 2019 - Jun 2021
Contributions:40 pushes, 1 branch in 2 years 3 months
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