Joshua Dunn
Senior Director, Computational Biology
Boston, Massachusetts, United States
Summary
👤
Senior🎓
Top SchoolJoshua Dunn is a senior computational biology leader with 11+ years of experience bridging molecular biology, genomics, and data-driven design, currently leading Computational Biology at Perimeter after senior leadership roles at Ginkgo Bioworks. He earned a PhD from UCSF studying alternative genetic-code decoding in Jonathan Weissman’s lab and has a track record of translating deep wet-lab expertise into engineered strains, patents, and internal software at companies like Microbia. Joshua blends hands-on lab skills (yeast and fungal genetics, fermentation, assay development) with bioinformatics, information design, and technical writing to drive cross-disciplinary projects. He is equally at home shipping computational tools and prototyping in the lab, enjoys collaborating with thinkers from other disciplines, and brings a curiosity for microbes—especially fungi—that often guides creative problem solving.
10 years of coding experience
10 years of employment as a software developer
Bachelor's Degree, Molecular, Cellular, & Developmental Biology, Bachelor's Degree, Molecular, Cellular, & Developmental Biology at Yale UniversityDoctor of Philosophy (Ph.D.), Biochemistry and Molecular Biology, Genomics, Doctor of Philosophy (Ph.D.), Biochemistry and Molecular Biology, Genomics at University of California, San Francisco
Github Skills (41)
bam10
sequencing10
rna-seq10
bioinformatics10
genomics10
tabix9
samtools9
pipeline9
bcftools9
htslib8
api7
genome7
bit6
validation6
hypothesis-testing6
Programming languages (4)
Github contributions (5)
joshuagryphon/plastid
Jun 2015 - May 2022
Position-wise analysis of sequencing and genomics data
Contributions:991 commits, 4 PRs, 344 pushes in 7 years
positionpipelinegenomics-datasequencinggenomics
joshuagryphon/rcfiles
Jul 2016 - Dec 2024
Contributions:43 pushes, 2 branches in 8 years 6 months
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