Juan Vizcaino
Proteomics And Metabolomics Team Leader at European Bioinformatics Institute | EMBL-EBI
South Cambridgeshire, England, United Kingdom
Summary
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Senior🎓
Top SchoolJuan Vizcaino is a scientific software and data leader who heads Proteomics and Metabolomics at EMBL-EBI, overseeing flagship resources such as PRIDE and MetaboLights and driving the ProteomeXchange and emerging MetabolomeXchange consortia. With 14+ years at EMBL-EBI and a career publication record of ~170 papers (h-index 63), he blends deep domain expertise in mass spectrometry, bioinformatics, and data standards with practical delivery of open repositories, tools, and pipelines. He has been a central architect of many community standards (mzIdentML, mzTab, ProForma 2.0 and others) that enable reproducible proteomics and cross-resource integration into UniProt and Expression Atlas. Equally at home in biology and software, he began as a molecular biologist with dual degrees in Pharmacy and Biochemistry and pivoted into computational MS during his postdoc work. Colleagues value him for translating technical standards into widely used infrastructure that advances open data practices across proteomics and metabolomics.
13 years of coding experience
2 years of employment as a software developer
PhD Molecular Biology Microbiology, PhD Molecular Biology Microbiology at Universidad de Salamanca
English, Spanish, French
Github Skills (55)
metadata10
file-format10
biodiversity10
experimental-design9
psi9
mass9
mass-spectrometry9
computational-biology8
web-application7
biology7
notation7
specification7
owl6
python6
bioinformatics5
Programming languages (6)
Github contributions (5)
HUPO-PSI/ProForma
Sep 2020 - Mar 2022
HUPO-PSI Standardized peptidoform notation
Contributions:22 commits, 17 pushes, 1 branch in 1 year 6 months
psispecificationnotationproformamass-spectrometry
javizca/Chuqiaoo.github.io
Apr 2019 - Jul 2021
Contributions:6 pushes in 2 years 3 months
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