Julian Spagnuolo
Bioinformatician
Basel, Basel-City, Switzerland
Summary
👤
Senior🎓
Top SchoolJulian Spagnuolo is a bioinformatician with eight years of experience translating biology-first questions into computational solutions for immunology and single-cell studies. He has led T-cell receptor discovery, flow cytometry and scRNA-seq analyses across industry and academia, delivering client projects, internal workshops, and mentoring while publishing translational findings. Comfortable moving between wet-lab design and statistical pipelines, Julian builds reproducible R/Python/Bash tooling and interactive Shiny apps to make complex immune-repertoire insights accessible. Now based in Basel and working at Cradle, he combines a PhD in biochemistry with hands-on molecular skills that accelerate experiment design and interpretation. Notably, his work emphasizes mechanistic, clinically relevant interpretation—finding antigen-dependent motifs and phenotypes rather than just patterns in high-dimensional data.
8 years of coding experience
7 years of employment as a software developer
Christs CollegeDoctor of Philosophy (PhD), Biochemistry, Doctor of Philosophy (PhD), Biochemistry at Massey University
Github Skills (55)
fasta8
blast8
seq7
rna-seq7
htslib6
fastq-format6
sequence6
sequencing6
ssa6
indexing6
derived6
bioinformatics5
rcpp5
immunology5
knitr5
Programming languages (7)
Github contributions (5)
JulianSpagnuolo/adtseq
Nov 2018 - Jun 2019
adtseq provides simple Rcpp methods to identify Antibody-Derived-Tags in single cell CITE/REAP-seq data
Contributions:47 commits, 16 PRs, 37 pushes in 7 months
derivedrcppseqantibodyidentify
JulianSpagnuolo/Bioscikit
Aug 2017 - Oct 2018
Contributions:2 PRs, 8 pushes, 3 branches in 1 year 2 months
sciencelifecalculations
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