Katarzyna Wręczycka
Computational Discovery Scientist
Zurich, Zurich, Switzerland
Summary
👤
Senior🎓
Top SchoolKatarzyna Wręczycka is a Data Science and Machine Learning Bioinformatics Consultant with a PhD in Computational Biology and over a decade of experience bridging academia and industry. She applies advanced ML and deep learning (PyTorch, scikit-learn, XGBoost) to large-scale genomic and single-cell datasets, with hands-on expertise in RNA-seq, ATAC-seq, bisulfite-seq and epigenomic integration. Her work spans building production-capable models and pipelines (Nextflow, Snakemake, Kafka) and contributing to bioinformatics software including Bioconductor packages and visualization enhancements for IGV. She has helped CROs and startups translate genomic signals into biomarkers and drug targets, and recently developed a VAE+LSTM system for detecting environmental chemical spikes from sensor data. Comfortable in international, cross-disciplinary teams, she combines creative problem solving with reproducible workflows and a track record of peer-reviewed discoveries in gene regulation and methylation-driven transcription factor dynamics. Based in Zurich, she maintains an active portfolio and open-source presence highlighting tooling for genomic annotation and TF network reconstruction.
11 years of coding experience
3 years of employment as a software developer
Doctor of Philosophy - PhD Computational Biology, Doctor of Philosophy - PhD Computational Biology at Humboldt-Universität zu BerlinMaster of Science (MSc) Biomathematics and Bioinformatics in the Faculty of Mathematics, Master of Science (MSc) Biomathematics and Bioinformatics in the Faculty of Mathematics at University of Warsaw
English, Polish, German
Stackoverflow
61reputation
2kreached
0answers
2questions
Github Skills (20)
visualization10
r-package10
r9
bioinformatics9
csv8
sequencing8
guix8
parsing8
fastq8
snakemake8
pipeline7
flat-file6
github-projects6
continuous-integration3
genomics3
Programming languages (4)
Github contributions (5)
BIMSBbioinfo/makeNGSnake
Jul 2015 - Jan 2017
Contributions:7 commits, 3 pushes, 3 branches in 1 year 6 months
katwre/bioinformatics-projects
Jun 2015 - Oct 2022
Contributions:13 commits, 16 pushes, 1 branch in 7 years 5 months
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