Kirill Shmilovich

Machine Learning Scientist at Genentech

Chicago, Illinois, United States
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Summary

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Kirill Shmilovich is a machine learning scientist with eight years of experience applying deep learning, active learning, and Bayesian optimization to molecular design, computational chemistry, and molecular dynamics. Currently at Genentech after a PhD at the University of Chicago, he has a track record of translating ML-driven discovery into experimentally relevant candidates for π-conjugated peptides and membrane-active small molecules. His work spans adaptive sampling, enhanced-sampling free-energy calculations, and generative backmapping from coarse-grained to atomistic trajectories, bridging physics-based simulation and data-driven models. Previous internships at insitro and Bosch BCAI produced methods that combine docking with ML and neural prediction of molecular wavefunctions, showing his comfort across both algorithmic innovation and domain-specific modeling. Based in Chicago with a strong quantitative background in math, physics, and chemistry, he often tackles problems where physical insight informs model architecture and experimental design.
code7 years of coding experience
job7 years of employment as a software developer
bookBachelor of Science - BS, Mathematics and Physics (double major); Chemistry (minor), Bachelor of Science - BS, Mathematics and Physics (double major); Chemistry (minor) at University of Wisconsin-Milwaukee
bookDoctor of Philosophy - PhD, Molecular Engineering, Doctor of Philosophy - PhD, Molecular Engineering at University of Chicago
languagesEnglish, Russian
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Github Skills (87)

python10
pdb10
pdb-files10
dynamics10
simulation10
ai9
markov-model9
gpu9
deep-learning9
compression9
lifecycle9
scoring9
docking9
pytorch9
scaling9

Programming languages (5)

C++CJavaScriptJupyter NotebookPython

Github contributions (5)

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KirillShmilovich/backmap

Aug 2019 - Dec 2019

Backmapping martini
Contributions:32 commits, 6 PRs, 23 pushes in 4 months
golangbackmappingmartini
Contributions:15 commits, 10 pushes, 1 branch in 2 years 2 months
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Kirill Shmilovich - Machine Learning Scientist at Genentech